IL_4JI1_059

3D structure

PDB id

4JI1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

G(4OC)C(5MC)G*CG(UR3)AAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI1_059 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.5686

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4JI1|1|A|G|1401
4JI1|1|A|4OC|1402
4JI1|1|A|C|1403
4JI1|1|A|5MC|1404
4JI1|1|A|G|1405
*
4JI1|1|A|C|1496
4JI1|1|A|G|1497
4JI1|1|A|UR3|1498
4JI1|1|A|A|1499
4JI1|1|A|A|1500
4JI1|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains