IL_4JI2_002

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

AAC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAC,GUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI2_002 not in the Motif Atlas

Geometric match to IL_3SZX_002

Geometric discrepancy: 0.1603

The information below is about IL_3SZX_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4JI2|1|A|A|32
4JI2|1|A|A|33
4JI2|1|A|C|34
*
4JI2|1|A|G|550
4JI2|1|A|U|551
4JI2|1|A|U|552

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN S12