IL_4JI2_016

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI2_016 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.0914

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4JI2|1|A|G|292
4JI2|1|A|G|293
*
4JI2|1|A|U|304
4JI2|1|A|G|305
4JI2|1|A|G|306
4JI2|1|A|C|307
4JI2|1|A|C|308

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN S12

Chain P

RIBOSOMAL PROTEIN S16