IL_4JI2_021

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI2_021 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.098

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4JI2|1|A|G|446
4JI2|1|A|G|447
4JI2|1|A|A|448
4JI2|1|A|C|449
4JI2|1|A|G|450
*
4JI2|1|A|C|483
4JI2|1|A|G|484
4JI2|1|A|G|485
4JI2|1|A|U|486
4JI2|1|A|A|487
4JI2|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN S4

Chain P

RIBOSOMAL PROTEIN S16