IL_4JI2_037

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

4JI2|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI2_037 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.2853

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4JI2|1|A|U|921
4JI2|1|A|G|922
4JI2|1|A|A|923
*
4JI2|1|A|U|1393
4JI2|1|A|A|1394
4JI2|1|A|C|1395
4JI2|1|A|A|1396

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN S5