IL_4JI2_072

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI2_072 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.3243

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4JI2|1|A|C|656
4JI2|1|A|G|657
4JI2|1|A|G|658
*
4JI2|1|A|C|747
4JI2|1|A|C|748
4JI2|1|A|C|749
4JI2|1|A|G|750

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

RIBOSOMAL PROTEIN S8

Chain O

RIBOSOMAL PROTEIN S15