IL_4JI4_070

3D structure

PDB id

4JI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GAAACCCC*GGGACUGAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI4_070 not in the Motif Atlas

Homologous match to IL_6CZR_360

Geometric discrepancy: 0.2334

The information below is about IL_6CZR_360

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4JI4|1|A|G|450
4JI4|1|A|A|451
4JI4|1|A|A|452
4JI4|1|A|A|453
4JI4|1|A|C|454
4JI4|1|A|C|455
4JI4|1|A|C|456
4JI4|1|A|C|457
*
4JI4|1|A|G|475
4JI4|1|A|G|476
4JI4|1|A|G|477
4JI4|1|A|A|478
4JI4|1|A|C|479
4JI4|1|A|U|480
4JI4|1|A|G|481
4JI4|1|A|A|482
4JI4|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN S16