IL_4JI4_079

3D structure

PDB id

4JI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

(5MC)ACGC*GUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI4_079 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.5925

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4JI4|1|A|5MC|1407
4JI4|1|A|A|1408
4JI4|1|A|C|1409
4JI4|1|A|G|1410
4JI4|1|A|C|1411
*
4JI4|1|A|G|1489
4JI4|1|A|U|1490
4JI4|1|A|G|1491
4JI4|1|A|A|1492
4JI4|1|A|A|1493
4JI4|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN S12