IL_4JI5_009

3D structure

PDB id

4JI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI5_009 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1057

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4JI5|1|A|C|132
4JI5|1|A|U|133
4JI5|1|A|A|134
4JI5|1|A|C|135
4JI5|1|A|C|136
*
4JI5|1|A|G|227
4JI5|1|A|A|228
4JI5|1|A|U|229
4JI5|1|A|G|230

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN S16

Chain T

RIBOSOMAL PROTEIN S20