IL_4JI5_064

3D structure

PDB id

4JI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

UGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI5_064 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2515

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

4JI5|1|A|U|1414
4JI5|1|A|G|1415
4JI5|1|A|G|1416
*
4JI5|1|A|C|1484
4JI5|1|A|U|1485
4JI5|1|A|G|1486

Current chains

Chain A

16S rRNA

Nearby chains