IL_4JI5_074

3D structure

PDB id

4JI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GAUGCCAC*GGAGCUAAUC

Length

18 nucleotides

Bulged bases

4JI5|1|A|U|1257, 4JI5|1|A|U|1278, 4JI5|1|A|A|1280, 4JI5|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4JI5|1|A|G|1255
4JI5|1|A|A|1256
4JI5|1|A|U|1257
4JI5|1|A|G|1258
4JI5|1|A|C|1259
4JI5|1|A|C|1260
4JI5|1|A|A|1261
4JI5|1|A|C|1262
*
4JI5|1|A|G|1273
4JI5|1|A|G|1274
4JI5|1|A|A|1275
4JI5|1|A|G|1276
4JI5|1|A|C|1277
4JI5|1|A|U|1278
4JI5|1|A|A|1279
4JI5|1|A|A|1280
4JI5|1|A|U|1281
4JI5|1|A|C|1282

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN S3

Chain J

RIBOSOMAL PROTEIN S10

Chain N

RIBOSOMAL PROTEIN S14

Chain U

RIBOSOMAL PROTEIN THX