IL_4JI6_020

3D structure

PDB id

4JI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI6_020 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0904

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4JI6|1|A|C|504
4JI6|1|A|G|505
4JI6|1|A|G|506
4JI6|1|A|C|507
4JI6|1|A|C|508
4JI6|1|A|A|509
4JI6|1|A|A|510
4JI6|1|A|C|511
*
4JI6|1|A|G|540
4JI6|1|A|G|541

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN S4

Chain L

RIBOSOMAL PROTEIN S12