IL_4JI6_027

3D structure

PDB id

4JI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI6_027 not in the Motif Atlas

Geometric match to IL_5J7L_031

Geometric discrepancy: 0.0922

The information below is about IL_5J7L_031

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4JI6|1|A|G|654
4JI6|1|A|A|655
*
4JI6|1|A|U|751
4JI6|1|A|G|752
4JI6|1|A|A|753
4JI6|1|A|C|754

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

RIBOSOMAL PROTEIN S8

Chain O

RIBOSOMAL PROTEIN S15