IL_4JI7_066

3D structure

PDB id

4JI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGGGAACCCG*UGGGGUGCCCCGCGAGGGGAGCCCU

Length

35 nucleotides

Bulged bases

4JI7|1|A|G|1003, 4JI7|1|A|G|1024, 4JI7|1|A|C|1030|||B, 4JI7|1|A|G|1030|||C, 4JI7|1|A|A|1030|||D

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4JI7|1|A|A|1001
4JI7|1|A|G|1002
4JI7|1|A|G|1003
4JI7|1|A|G|1003|||A
4JI7|1|A|A|1004
4JI7|1|A|A|1005
4JI7|1|A|C|1006
4JI7|1|A|C|1007
4JI7|1|A|C|1008
4JI7|1|A|G|1009
*
4JI7|1|A|U|1020
4JI7|1|A|G|1021
4JI7|1|A|G|1022
4JI7|1|A|G|1023
4JI7|1|A|G|1024
4JI7|1|A|U|1025
4JI7|1|A|G|1026
4JI7|1|A|C|1027
4JI7|1|A|C|1028
4JI7|1|A|C|1029
4JI7|1|A|C|1030
4JI7|1|A|G|1030|||A
4JI7|1|A|C|1030|||B
4JI7|1|A|G|1030|||C
4JI7|1|A|A|1030|||D
4JI7|1|A|G|1031
4JI7|1|A|G|1032
4JI7|1|A|G|1033
4JI7|1|A|G|1034
4JI7|1|A|A|1035
4JI7|1|A|G|1036
4JI7|1|A|C|1037
4JI7|1|A|C|1038
4JI7|1|A|C|1039
4JI7|1|A|U|1040

Current chains

Chain A

16S rRNA

Nearby chains