IL_4JI8_038

3D structure

PDB id

4JI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UGG*CACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI8_038 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.2779

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4JI8|1|A|U|952
4JI8|1|A|G|953
4JI8|1|A|G|954
*
4JI8|1|A|C|1226
4JI8|1|A|A|1227
4JI8|1|A|C|1228
4JI8|1|A|A|1229

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

RIBOSOMAL PROTEIN S13

Chain S

RIBOSOMAL PROTEIN S19