IL_4JI8_068

3D structure

PDB id

4JI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AGGGAACCC*GGGGUGCCCCGCGAGGGGAGCCCU

Length

33 nucleotides

Bulged bases

4JI8|1|A|A|1005, 4JI8|1|A|G|1030|||A, 4JI8|1|A|G|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4JI8|1|A|A|1001
4JI8|1|A|G|1002
4JI8|1|A|G|1003
4JI8|1|A|G|1003|||A
4JI8|1|A|A|1004
4JI8|1|A|A|1005
4JI8|1|A|C|1006
4JI8|1|A|C|1007
4JI8|1|A|C|1008
*
4JI8|1|A|G|1021
4JI8|1|A|G|1022
4JI8|1|A|G|1023
4JI8|1|A|G|1024
4JI8|1|A|U|1025
4JI8|1|A|G|1026
4JI8|1|A|C|1027
4JI8|1|A|C|1028
4JI8|1|A|C|1029
4JI8|1|A|C|1030
4JI8|1|A|G|1030|||A
4JI8|1|A|C|1030|||B
4JI8|1|A|G|1030|||C
4JI8|1|A|A|1030|||D
4JI8|1|A|G|1031
4JI8|1|A|G|1032
4JI8|1|A|G|1033
4JI8|1|A|G|1034
4JI8|1|A|A|1035
4JI8|1|A|G|1036
4JI8|1|A|C|1037
4JI8|1|A|C|1038
4JI8|1|A|C|1039
4JI8|1|A|U|1040

Current chains

Chain A

16S rRNA

Nearby chains