3D structure

PDB id
4JV5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structures of pseudouridinilated stop codons with ASLs
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
4JV5|1|A|A|412
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4JV5_018 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.1065
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

4JV5|1|A|G|409
4JV5|1|A|G|410
4JV5|1|A|A|411
4JV5|1|A|A|412
4JV5|1|A|G|413
4JV5|1|A|A|414
4JV5|1|A|A|415
4JV5|1|A|G|416
*
4JV5|1|A|U|427
4JV5|1|A|G|428
4JV5|1|A|U|429
4JV5|1|A|A|430
4JV5|1|A|A|431
4JV5|1|A|A|432
4JV5|1|A|C|433

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain D
30S ribosomal protein S4

Coloring options:


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