IL_4JV5_042

3D structure

PDB id

4JV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GGGAAC*GGUGCCCCGCGAGGGGAGCCCU

Length

28 nucleotides

Bulged bases

4JV5|1|A|G|1030|||C, 4JV5|1|A|A|1030|||D, 4JV5|1|A|G|1034

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4JV5|1|A|G|1001|||A
4JV5|1|A|G|1002
4JV5|1|A|G|1003
4JV5|1|A|A|1004
4JV5|1|A|A|1005
4JV5|1|A|C|1006
*
4JV5|1|A|G|1023
4JV5|1|A|G|1024
4JV5|1|A|U|1025
4JV5|1|A|G|1026
4JV5|1|A|C|1027
4JV5|1|A|C|1028
4JV5|1|A|C|1029
4JV5|1|A|C|1030
4JV5|1|A|G|1030|||A
4JV5|1|A|C|1030|||B
4JV5|1|A|G|1030|||C
4JV5|1|A|A|1030|||D
4JV5|1|A|G|1031
4JV5|1|A|G|1032
4JV5|1|A|G|1033
4JV5|1|A|G|1034
4JV5|1|A|A|1035
4JV5|1|A|G|1036
4JV5|1|A|C|1037
4JV5|1|A|C|1038
4JV5|1|A|C|1039
4JV5|1|A|U|1040

Current chains

Chain A

16S ribosomal RNA

Nearby chains