IL_4JV5_063

3D structure

PDB id

4JV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JV5_063 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.0783

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4JV5|1|A|C|1431
4JV5|1|A|G|1432
4JV5|1|A|A|1433
4JV5|1|A|A|1434
4JV5|1|A|G|1435
*
4JV5|1|A|C|1466
4JV5|1|A|G|1467
4JV5|1|A|A|1468
4JV5|1|A|G|1469

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein 20