3D structure

PDB id
4JV5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structures of pseudouridinilated stop codons with ASLs
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
CCAC*GGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4JV5_069 not in the Motif Atlas
Homologous match to IL_4LFB_067
Geometric discrepancy: 0.1272
The information below is about IL_4LFB_067
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

4JV5|1|A|C|1259
4JV5|1|A|C|1260
4JV5|1|A|A|1261
4JV5|1|A|C|1262
*
4JV5|1|A|G|1273
4JV5|1|A|G|1274
4JV5|1|A|A|1275
4JV5|1|A|G|1276

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain U
30S ribosomal protein THX

Coloring options:


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