IL_4JYA_062

3D structure

PDB id

4JYA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGG,CCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JYA_062 not in the Motif Atlas

Geometric match to IL_4KQ0_001

Geometric discrepancy: 0.1609

The information below is about IL_4KQ0_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4JYA|1|A|C|1403
4JYA|1|A|G|1404
4JYA|1|A|G|1405
*
4JYA|1|A|C|1456
4JYA|1|A|C|1457
4JYA|1|A|G|1458

Current chains

Chain A

16S ribosomal RNA

Nearby chains