IL_4JYA_067
3D structure
- PDB id
- 4JYA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structures of pseudouridinilated stop codons with ASLs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCG*CUGG
- Length
- 7 nucleotides
- Bulged bases
- 4JYA|1|A|U|1178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4JYA_067 not in the Motif Atlas
- Homologous match to IL_4LFB_047
- Geometric discrepancy: 0.4704
- The information below is about IL_4LFB_047
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_68118.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 31
Unit IDs
4JYA|1|A|C|1042
4JYA|1|A|C|1043
4JYA|1|A|G|1044
*
4JYA|1|A|C|1177
4JYA|1|A|U|1178
4JYA|1|A|G|1179
4JYA|1|A|G|1180
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain E
- 30S ribosomal protein S5
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
- Chain Y
- ASL-tRNA
Coloring options: