IL_4K0K_013

3D structure

PDB id

4K0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4K0K_013 not in the Motif Atlas

Homologous match to IL_4LFB_012

Geometric discrepancy: 0.1002

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22002.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4K0K|1|A|U|245
4K0K|1|A|A|246
4K0K|1|A|G|247
4K0K|1|A|U|248
*
4K0K|1|A|A|270
4K0K|1|A|G|271

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S17