IL_4K0K_041

3D structure

PDB id

4K0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAGGGAAC*GGUGCCCCGCGAGGGGAGCCCUA

Length

31 nucleotides

Bulged bases

4K0K|1|A|U|1004, 4K0K|1|A|C|1009, 4K0K|1|A|G|1012, 4K0K|1|A|A|1013, 4K0K|1|A|G|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4K0K|1|A|U|978
4K0K|1|A|A|979
4K0K|1|A|G|980
4K0K|1|A|G|981
4K0K|1|A|G|982
4K0K|1|A|A|983
4K0K|1|A|A|984
4K0K|1|A|C|985
*
4K0K|1|A|G|1002
4K0K|1|A|G|1003
4K0K|1|A|U|1004
4K0K|1|A|G|1005
4K0K|1|A|C|1006
4K0K|1|A|C|1007
4K0K|1|A|C|1008
4K0K|1|A|C|1009
4K0K|1|A|G|1010
4K0K|1|A|C|1011
4K0K|1|A|G|1012
4K0K|1|A|A|1013
4K0K|1|A|G|1014
4K0K|1|A|G|1015
4K0K|1|A|G|1016
4K0K|1|A|G|1017
4K0K|1|A|A|1018
4K0K|1|A|G|1019
4K0K|1|A|C|1020
4K0K|1|A|C|1021
4K0K|1|A|C|1022
4K0K|1|A|U|1023
4K0K|1|A|A|1024

Current chains

Chain A

16S ribosomal RNA

Nearby chains