IL_4K0K_060

3D structure

PDB id

4K0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4K0K_060 not in the Motif Atlas

Homologous match to IL_4LFB_060

Geometric discrepancy: 0.2667

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4K0K|1|A|G|1399
4K0K|1|A|G|1400
4K0K|1|A|A|1401
4K0K|1|A|G|1402
*
4K0K|1|A|U|1459
4K0K|1|A|G|1460
4K0K|1|A|A|1461
4K0K|1|A|C|1462

Current chains

Chain A

16S ribosomal RNA

Nearby chains