IL_4K0K_064

3D structure

PDB id

4K0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

4K0K|1|A|G|384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4K0K_064 not in the Motif Atlas

Homologous match to IL_6CZR_128

Geometric discrepancy: 0.2054

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4K0K|1|A|U|371
4K0K|1|A|G|372
4K0K|1|A|G|373
*
4K0K|1|A|C|382
4K0K|1|A|U|383
4K0K|1|A|G|384
4K0K|1|A|A|385

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16