IL_4KHP_040

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KHP_040 not in the Motif Atlas

Homologous match to IL_4LFB_039

Geometric discrepancy: 0.1238

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4KHP|1|A|G|971
4KHP|1|A|A|972
4KHP|1|A|C|973
4KHP|1|A|A|974
4KHP|1|A|U|975
*
4KHP|1|A|A|1027
4KHP|1|A|C|1028

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain N

30S Ribosomal protein S14