IL_4KHP_046
3D structure
- PDB id
- 4KHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CG*CUG
- Length
- 5 nucleotides
- Bulged bases
- 4KHP|1|A|U|1178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4KHP_046 not in the Motif Atlas
- Homologous match to IL_5J7L_049
- Geometric discrepancy: 0.4431
- The information below is about IL_5J7L_049
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 132
Unit IDs
4KHP|1|A|C|1043
4KHP|1|A|G|1044
*
4KHP|1|A|C|1177
4KHP|1|A|U|1178
4KHP|1|A|G|1179
Current chains
- Chain A
- 16S Ribosomal RNA
Nearby chains
- Chain C
- 30S Ribosomal protein S3
- Chain E
- 30S Ribosomal protein S5
- Chain I
- 30S Ribosomal protein S9
- Chain J
- 30S Ribosomal protein S10
- Chain N
- 30S Ribosomal protein S14
Coloring options: