IL_4KHP_052

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KHP_052 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.278

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4KHP|1|A|C|1241
4KHP|1|A|C|1242
4KHP|1|A|A|1243
4KHP|1|A|C|1244
*
4KHP|1|A|G|1255
4KHP|1|A|G|1256
4KHP|1|A|A|1257
4KHP|1|A|G|1258

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain U

30S Ribosomal protein THX