IL_4KHP_059

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KHP_059 not in the Motif Atlas

Homologous match to IL_4LFB_060

Geometric discrepancy: 0.1059

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

4KHP|1|A|G|1399
4KHP|1|A|G|1400
4KHP|1|A|A|1401
4KHP|1|A|G|1402
*
4KHP|1|A|U|1459
4KHP|1|A|G|1460
4KHP|1|A|A|1461
4KHP|1|A|C|1462

Current chains

Chain A

16S Ribosomal RNA

Nearby chains