IL_4KHP_060

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KHP_060 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.0657

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.6

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4KHP|1|A|C|1414
4KHP|1|A|G|1415
4KHP|1|A|A|1416
4KHP|1|A|A|1417
4KHP|1|A|G|1418
*
4KHP|1|A|C|1444
4KHP|1|A|G|1445
4KHP|1|A|A|1446
4KHP|1|A|G|1447

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain T

30S Ribosomal protein S20