IL_4KHP_064

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAGGGAAC*GGUGCCCCGCGAGGGGAGCCCUA

Length

31 nucleotides

Bulged bases

4KHP|1|A|C|1008, 4KHP|1|A|C|1009, 4KHP|1|A|G|1012, 4KHP|1|A|A|1013, 4KHP|1|A|G|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4KHP|1|A|U|978
4KHP|1|A|A|979
4KHP|1|A|G|980
4KHP|1|A|G|981
4KHP|1|A|G|982
4KHP|1|A|A|983
4KHP|1|A|A|984
4KHP|1|A|C|985
*
4KHP|1|A|G|1002
4KHP|1|A|G|1003
4KHP|1|A|U|1004
4KHP|1|A|G|1005
4KHP|1|A|C|1006
4KHP|1|A|C|1007
4KHP|1|A|C|1008
4KHP|1|A|C|1009
4KHP|1|A|G|1010
4KHP|1|A|C|1011
4KHP|1|A|G|1012
4KHP|1|A|A|1013
4KHP|1|A|G|1014
4KHP|1|A|G|1015
4KHP|1|A|G|1016
4KHP|1|A|G|1017
4KHP|1|A|A|1018
4KHP|1|A|G|1019
4KHP|1|A|C|1020
4KHP|1|A|C|1021
4KHP|1|A|C|1022
4KHP|1|A|U|1023
4KHP|1|A|A|1024

Current chains

Chain A

16S Ribosomal RNA

Nearby chains