IL_4KR6_003

3D structure

PDB id

4KR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a 4-thiouridine synthetase - RNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

UAGUGUCCU*AG

Length

11 nucleotides

Bulged bases

4KR6|1|C|G|12, 4KR6|1|C|U|13, 4KR6|1|C|C|14

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KR6_003 not in the Motif Atlas

Geometric match to IL_7JJU_001

Geometric discrepancy: 0.3307

The information below is about IL_7JJU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

4KR6|1|C|U|8
4KR6|1|C|A|9
4KR6|1|C|G|10
4KR6|1|C|U|11
4KR6|1|C|G|12
4KR6|1|C|U|13
4KR6|1|C|C|14
4KR6|1|C|C|15
4KR6|1|C|U|16
*
4KR6|1|C|A|27
4KR6|1|C|G|28

Current chains

Chain C

RNA (39-MER)

Nearby chains

Chain A

Probable tRNA sulfurtransferase

Chain B

Probable tRNA sulfurtransferase