IL_4KVB_057

3D structure

PDB id

4KVB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17

Experimental method

X-RAY DIFFRACTION

Resolution

4.2 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

4KVB|1|A|A|1492

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KVB_057 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.385

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4KVB|1|A|G|1405
4KVB|1|A|U|1406
4KVB|1|A|5MC|1407
4KVB|1|A|A|1408
4KVB|1|A|C|1409
*
4KVB|1|A|G|1491
4KVB|1|A|A|1492
4KVB|1|A|A|1493
4KVB|1|A|G|1494
4KVB|1|A|U|1495
4KVB|1|A|C|1496

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12