IL_4KVB_059

3D structure

PDB id

4KVB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17

Experimental method

X-RAY DIFFRACTION

Resolution

4.2 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KVB_059 not in the Motif Atlas

Homologous match to IL_4LFB_060

Geometric discrepancy: 0.1369

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4KVB|1|A|G|1416
4KVB|1|A|G|1417
4KVB|1|A|A|1418
4KVB|1|A|G|1419
*
4KVB|1|A|U|1481
4KVB|1|A|G|1482
4KVB|1|A|A|1483
4KVB|1|A|C|1484

Current chains

Chain A

16S rRNA

Nearby chains