IL_4KZX_061

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

GUU*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZX_061 not in the Motif Atlas

Geometric match to IL_4V9F_023

Geometric discrepancy: 0.1707

The information below is about IL_4V9F_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4KZX|1|i|G|1106
4KZX|1|i|U|1107
4KZX|1|i|U|1108
*
4KZX|1|i|G|1117
4KZX|1|i|A|1118
4KZX|1|i|C|1119

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein SA

Chain B

40S ribosomal protein S3a

Chain R

40S ribosomal protein S17

Chain b

40S ribosomal protein S27