IL_4KZX_106

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

CCGG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZX_106 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.2365

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4KZX|1|i|C|1749
4KZX|1|i|C|1750
4KZX|1|i|G|1751
4KZX|1|i|G|1752
*
4KZX|1|i|C|1768
4KZX|1|i|U|1769
4KZX|1|i|G|1770
4KZX|1|i|G|1771

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6