IL_4KZY_070

3D structure

PDB id

4KZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.

Experimental method

X-RAY DIFFRACTION

Resolution

7.01 Å

Loop

Sequence

GGC*GCAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZY_070 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3482

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

4KZY|1|i|G|1231
4KZY|1|i|G|1232
4KZY|1|i|C|1233
*
4KZY|1|i|G|1515
4KZY|1|i|C|1516
4KZY|1|i|A|1517
4KZY|1|i|C|1518

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain P

40S Ribosomal Protein S15

Chain S

40S Ribosomal Protein S18

Chain n

human initiation factor eIF1A