IL_4KZZ_020

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

UCG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UCG,CGA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_020 not in the Motif Atlas

Geometric match to IL_2D6F_001

Geometric discrepancy: 0.242

The information below is about IL_2D6F_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4KZZ|1|i|U|305
4KZZ|1|i|C|306
4KZZ|1|i|G|307
*
4KZZ|1|i|C|324
4KZZ|1|i|G|325
4KZZ|1|i|A|326

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain E

40S Ribosomal Protein S4X

Chain G

40S Ribosomal Protein S6