IL_4KZZ_023

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

4KZZ|1|i|U|358, 4KZZ|1|i|C|359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_023 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2452

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4KZZ|1|i|U|356
4KZZ|1|i|U|357
4KZZ|1|i|U|358
4KZZ|1|i|C|359
4KZZ|1|i|G|360
4KZZ|1|i|A|361
*
4KZZ|1|i|U|383
4KZZ|1|i|G|384

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain I

40S Ribosomal Protein S8

Chain L

40S Ribosomal Protein S11