IL_4KZZ_032

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_032 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1922

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

4KZZ|1|i|U|556
4KZZ|1|i|C|557
4KZZ|1|i|C|558
4KZZ|1|i|A|559
*
4KZZ|1|i|U|571
4KZZ|1|i|U|572
4KZZ|1|i|A|573
4KZZ|1|i|A|574

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain J

40S Ribosomal Protein S9

Chain Y

40S Ribosomal Protein S24