IL_4KZZ_056

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_056 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.2374

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4KZZ|1|i|A|1038
4KZZ|1|i|G|1039
4KZZ|1|i|G|1040
4KZZ|1|i|U|1041
4KZZ|1|i|U|1042
4KZZ|1|i|C|1043
*
4KZZ|1|i|G|1067
4KZZ|1|i|U|1068
4KZZ|1|i|U|1069

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain O

40S Ribosomal Protein S14

Chain a

40S Ribosomal Protein S26