IL_4KZZ_061

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

4KZZ|1|i|C|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_061 not in the Motif Atlas

Geometric match to IL_4WF9_035

Geometric discrepancy: 0.3993

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

4KZZ|1|i|G|1104
4KZZ|1|i|C|1105
4KZZ|1|i|G|1106
*
4KZZ|1|i|C|1119
4KZZ|1|i|C|1120

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain A

40S Ribosomal Protein SA

Chain B

40S Ribosomal Protein S3A

Chain R

40S Ribosomal Protein S17

Chain b

40S Ribosomal Protein S27