IL_4KZZ_075

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

4KZZ|1|i|G|1493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_075 not in the Motif Atlas

Geometric match to IL_8ZA0_002

Geometric discrepancy: 0.3708

The information below is about IL_8ZA0_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

4KZZ|1|i|U|1329
4KZZ|1|i|G|1330
*
4KZZ|1|i|U|1492
4KZZ|1|i|G|1493
4KZZ|1|i|A|1494

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain D

40S Ribosomal Protein S3

Chain K

40S Ribosomal Protein S10

Chain U

40S Ribosomal Protein S20

Chain d

40S Ribosomal Protein S29