IL_4KZZ_080
3D structure
- PDB id
- 4KZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7.03 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 4KZZ|1|i|U|1393
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4KZZ_080 not in the Motif Atlas
- Geometric match to IL_4V88_429
- Geometric discrepancy: 0.3465
- The information below is about IL_4V88_429
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
4KZZ|1|i|C|1391
4KZZ|1|i|A|1392
4KZZ|1|i|U|1393
4KZZ|1|i|G|1394
4KZZ|1|i|C|1395
*
4KZZ|1|i|G|1443
4KZZ|1|i|A|1444
4KZZ|1|i|G|1445
4KZZ|1|i|G|1446
Current chains
- Chain i
- 18S Ribosomal RNA
Nearby chains
- Chain Q
- 40S Ribosomal Protein S16
- Chain R
- 40S Ribosomal Protein S17
- Chain U
- 40S Ribosomal Protein S20
- Chain g
- 40S Ribosomal Protein RACK1
Coloring options: