IL_4KZZ_085

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

CCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_085 not in the Motif Atlas

Geometric match to IL_5Y85_005

Geometric discrepancy: 0.3766

The information below is about IL_5Y85_005

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

4KZZ|1|i|C|1413
4KZZ|1|i|C|1414
4KZZ|1|i|C|1415
*
4KZZ|1|i|G|1424
4KZZ|1|i|G|1425

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain Q

40S Ribosomal Protein S16

Chain T

40S Ribosomal Protein S19