IL_4KZZ_116
3D structure
- PDB id
- 4KZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7.03 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 4KZZ|1|i|C|1149, 4KZZ|1|i|U|1151, 4KZZ|1|i|G|1153
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4KZZ_116 not in the Motif Atlas
- Homologous match to IL_8P9A_425
- Geometric discrepancy: 0.2044
- The information below is about IL_8P9A_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
4KZZ|1|i|C|1087
4KZZ|1|i|G|1088
4KZZ|1|i|A|1089
*
4KZZ|1|i|U|1148
4KZZ|1|i|C|1149
4KZZ|1|i|U|1150
4KZZ|1|i|U|1151
4KZZ|1|i|U|1152
4KZZ|1|i|G|1153
4KZZ|1|i|G|1154
Current chains
- Chain i
- 18S Ribosomal RNA
Nearby chains
- Chain C
- 40S Ribosomal Protein S2
- Chain L
- 40S Ribosomal Protein S11
- Chain N
- 40S Ribosomal Protein S13
- Chain W
- 40S Ribosomal Protein S15A
- Chain X
- 40S Ribosomal Protein S23
- Chain b
- 40S Ribosomal Protein S27
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