IL_4L47_017

3D structure

PDB id

4L47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4L47_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1159

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4L47|1|QA|G|409
4L47|1|QA|G|410
4L47|1|QA|A|411
4L47|1|QA|A|412
4L47|1|QA|G|413
4L47|1|QA|A|414
4L47|1|QA|A|415
4L47|1|QA|G|416
*
4L47|1|QA|U|427
4L47|1|QA|G|428
4L47|1|QA|U|429
4L47|1|QA|A|430
4L47|1|QA|A|431
4L47|1|QA|A|432
4L47|1|QA|C|433

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4