3D structure

PDB id
4L47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.22 Å

Loop

Sequence
GCGUAGGAUAG*CC
Length
13 nucleotides
Bulged bases
4L47|1|RA|C|2111, 4L47|1|RA|G|2112, 4L47|1|RA|U|2113, 4L47|1|RA|G|2115, 4L47|1|RA|U|2118
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4L47_143 not in the Motif Atlas
Geometric match to IL_1KXK_003
Geometric discrepancy: 0.2802
The information below is about IL_1KXK_003
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

4L47|1|RA|G|2110
4L47|1|RA|C|2111
4L47|1|RA|G|2112
4L47|1|RA|U|2113
4L47|1|RA|A|2114
4L47|1|RA|G|2115
4L47|1|RA|G|2116
4L47|1|RA|A|2117
4L47|1|RA|U|2118
4L47|1|RA|A|2119
4L47|1|RA|G|2120
*
4L47|1|RA|C|2178
4L47|1|RA|C|2179

Current chains

Chain RA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5302 s