3D structure

PDB id
4L47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.22 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4L47_262 not in the Motif Atlas
Homologous match to IL_7RQB_029
Geometric discrepancy: 0.0647
The information below is about IL_7RQB_029
Detailed Annotation
C-loop with bulged stacked A's
Broad Annotation
C-loop
Motif group
IL_02509.1
Basepair signature
cWW-tSW-cWS-cSH-tWH-R-R-cWW
Number of instances in this motif group
5

Unit IDs

4L47|1|YA|G|864
4L47|1|YA|C|865
4L47|1|YA|A|866
4L47|1|YA|C|867
4L47|1|YA|U|868
*
4L47|1|YA|A|909
4L47|1|YA|A|910
4L47|1|YA|A|911
4L47|1|YA|C|912

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YB
5S ribosomal RNA; 5S rRNA
Chain YQ
50S ribosomal protein L16
Chain YZ
50S ribosomal protein L25

Coloring options:


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